Detailed information of SNP:
|
SNP ID:
sf0212842541(Gbrowse)
Chromosome: chr02 Position: 12842541 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1274 | 84.30% | 15.70% |
| All Indica | 669 | 72.50% | 27.50% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 57 | 82.46% | 17.54% |
| Indica I | 319 | 74.61% | 25.39% |
| Indica II | 172 | 70.93% | 29.07% |
| Indica Intermediate | 178 | 70.22% | 29.78% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212842541 | A->G | LOC_Os02g21620(LOC_Os02g21620.1) | INTRON |