Detailed information of SNP:
|
SNP ID:
sf0212843654(Gbrowse)
Chromosome: chr02 Position: 12843654 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 91.80% | 8.20% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 493 | 77.69% | 22.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 95.21% | 4.79% |
| Tropical Japonica | 91 | 18.68% | 81.32% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212843654 | G->A | LOC_Os02g21620(LOC_Os02g21620.1) | INTRON |