Detailed information of SNP:



SNP ID: sf0213047782(Gbrowse)

Chromosome: chr02

Position: 13047782
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1220 79.51% 20.49%
All Indica615 60.65% 39.35%
All Japonica495 99.60% 0.40%
Aus60 100.00% 0.00%
Indica I278 68.71% 31.29%
Indica II160 58.13% 41.87%
Indica Intermediate177 50.28% 49.72%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate66 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate36 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0213047782 C->T INTERGENIC None