Detailed information of SNP:
|
SNP ID:
sf0213047782(Gbrowse)
Chromosome: chr02 Position: 13047782 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1220 | 79.51% | 20.49% |
| All Indica | 615 | 60.65% | 39.35% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 60 | 100.00% | 0.00% |
| Indica I | 278 | 68.71% | 31.29% |
| Indica II | 160 | 58.13% | 41.87% |
| Indica Intermediate | 177 | 50.28% | 49.72% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0213047782 | C->T | INTERGENIC | None |