Detailed information of SNP:
|
SNP ID:
sf0213112185(Gbrowse)
Chromosome: chr02 Position: 13112185 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 96.33% | 3.67% |
| All Indica | 771 | 93.51% | 6.49% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 360 | 94.17% | 5.83% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 201 | 92.54% | 7.46% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0213112185 | C->T | INTERGENIC | None |