Detailed information of SNP:



SNP ID: sf0213112185(Gbrowse)

Chromosome: chr02

Position: 13112185
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1388 96.33% 3.67%
All Indica771 93.51% 6.49%
All Japonica497 99.80% 0.20%
Aus66 100.00% 0.00%
Indica I360 94.17% 5.83%
Indica II210 93.33% 6.67%
Indica Intermediate201 92.54% 7.46%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0213112185 C->T INTERGENIC None