Detailed information of SNP:
|
SNP ID:
sf0213138025(Gbrowse)
Chromosome: chr02 Position: 13138025 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 80.01% | 19.99% |
| All Indica | 769 | 65.02% | 34.98% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 363 | 72.73% | 27.27% |
| Indica II | 204 | 61.27% | 38.73% |
| Indica Intermediate | 202 | 54.95% | 45.05% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0213138025 | G->T | LOC_Os02g22084(LOC_Os02g22084.1) | SNPs that introduce initiation codons |
| sf0213138025 | G->T | LOC_Os02g22084(LOC_Os02g22084.2) | SNPs that introduce initiation codons |