Detailed information of SNP:
|
SNP ID:
sf0213232685(Gbrowse)
Chromosome: chr02 Position: 13232685 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1273 | 97.09% | 2.91% |
| All Indica | 661 | 94.40% | 5.60% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 293 | 88.05% | 11.95% |
| Indica II | 189 | 100.00% | 0.00% |
| Indica Intermediate | 179 | 98.88% | 1.12% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0213232685 | C->A | INTERGENIC | None |