Detailed information of SNP:
|
SNP ID:
sf0213442651(Gbrowse)
Chromosome: chr02 Position: 13442651 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 52.07% | 47.93% |
| All Indica | 763 | 24.77% | 75.23% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 358 | 30.17% | 69.83% |
| Indica II | 203 | 16.75% | 83.25% |
| Indica Intermediate | 202 | 23.27% | 76.73% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0213442651 | A->G | INTERGENIC | None |