Detailed information of SNP:
|
SNP ID:
sf0213525741(Gbrowse)
Chromosome: chr02 Position: 13525741 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 75.32% | 24.68% |
| All Indica | 782 | 56.65% | 43.35% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 66.12% | 33.88% |
| Indica II | 207 | 51.21% | 48.79% |
| Indica Intermediate | 206 | 45.15% | 54.85% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0213525741 | C->T | LOC_Os02g22700(LOC_Os02g22700.1) | Non-Synonymous SNP |