Detailed information of SNP:
|
SNP ID:
sf0213579768(Gbrowse)
Chromosome: chr02 Position: 13579768 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1337 | 93.27% | 6.73% |
| All Indica | 727 | 89.13% | 10.87% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 85.25% | 14.75% |
| Indica I | 342 | 89.77% | 10.23% |
| Indica II | 197 | 87.82% | 12.18% |
| Indica Intermediate | 188 | 89.36% | 10.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0213579768 | C->T | INTERGENIC | None |