Detailed information of SNP:
|
SNP ID:
sf0213591882(Gbrowse)
Chromosome: chr02 Position: 13591882 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1360 | 92.06% | 7.94% |
| All Indica | 754 | 87.27% | 12.73% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 59 | 86.44% | 13.56% |
| Indica I | 354 | 85.03% | 14.97% |
| Indica II | 200 | 92.00% | 8.00% |
| Indica Intermediate | 200 | 86.50% | 13.50% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0213591882 | T->C | LOC_Os02g22810(LOC_Os02g22810.1) | Non-Synonymous SNP |