Detailed information of SNP:
|
SNP ID:
sf0213593471(Gbrowse)
Chromosome: chr02 Position: 13593471 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 97.76% | 2.24% |
| All Indica | 776 | 97.29% | 2.71% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 61 | 86.89% | 13.11% |
| Indica I | 368 | 99.18% | 0.82% |
| Indica II | 203 | 95.07% | 4.93% |
| Indica Intermediate | 205 | 96.10% | 3.90% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0213593471 | C->T | INTERGENIC | None |