Detailed information of SNP:
|
SNP ID:
sf0213655662(Gbrowse)
Chromosome: chr02 Position: 13655662 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 94.42% | 5.58% |
| All Indica | 781 | 90.91% | 9.09% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 93.65% | 6.35% |
| Indica I | 369 | 89.16% | 10.84% |
| Indica II | 205 | 93.17% | 6.83% |
| Indica Intermediate | 207 | 91.79% | 8.21% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0213655662 | A->C | INTERGENIC | None |