Detailed information of SNP:
|
SNP ID:
sf0213657296(Gbrowse)
Chromosome: chr02 Position: 13657296 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 53.40% | 46.60% |
| All Indica | 771 | 84.44% | 15.56% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 60 | 90.00% | 10.00% |
| Indica I | 364 | 80.22% | 19.78% |
| Indica II | 205 | 90.73% | 9.27% |
| Indica Intermediate | 202 | 85.64% | 14.36% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0213657296 | G->C | INTERGENIC | None |