Detailed information of SNP:
|
SNP ID:
sf0213659107(Gbrowse)
Chromosome: chr02 Position: 13659107 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 59.16% | 40.84% |
| All Indica | 792 | 92.68% | 7.32% |
| All Japonica | 494 | 2.02% | 97.98% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 91.44% | 8.56% |
| Indica II | 209 | 93.30% | 6.70% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 92 | 3.26% | 96.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0213659107 | A->G | INTERGENIC | None |