Detailed information of SNP:
|
SNP ID:
sf0213814153(Gbrowse)
Chromosome: chr02 Position: 13814153 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 76.46% | 23.54% |
| All Indica | 786 | 59.03% | 40.97% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 66.76% | 33.24% |
| Indica II | 207 | 55.56% | 44.44% |
| Indica Intermediate | 209 | 48.80% | 51.20% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0213814153 | C->T | INTERGENIC | None |