Detailed information of SNP:
|
SNP ID:
sf0213816628(Gbrowse)
Chromosome: chr02 Position: 13816628 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 58.79% | 41.21% |
| All Indica | 773 | 95.60% | 4.40% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 359 | 95.82% | 4.18% |
| Indica II | 204 | 94.12% | 5.88% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0213816628 | T->G | INTERGENIC | None |