Detailed information of SNP:
|
SNP ID:
sf0213819154(Gbrowse)
Chromosome: chr02 Position: 13819154 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 55.74% | 44.26% |
| All Indica | 795 | 84.65% | 15.35% |
| All Japonica | 495 | 4.04% | 95.96% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 71.58% | 28.42% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 334 | 3.89% | 96.11% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0213819154 | A->G | LOC_Os02g23870(LOC_Os02g23870.1) | INTRON |