Detailed information of SNP:



SNP ID: sf0213905192(Gbrowse)

Chromosome: chr02

Position: 13905192
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1416 98.02% 1.98%
All Indica796 96.61% 3.39%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I374 100.00% 0.00%
Indica II212 87.26% 12.74%
Indica Intermediate210 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0213905192 G->A LOC_Os02g23990(LOC_Os02g23990.1) Non-Synonymous SNP