Detailed information of SNP:
|
SNP ID:
sf0213981565(Gbrowse)
Chromosome: chr02 Position: 13981565 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 54.93% | 45.07% |
| All Indica | 763 | 90.43% | 9.57% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 65 | 58.46% | 41.54% |
| Indica I | 361 | 92.24% | 7.76% |
| Indica II | 200 | 91.00% | 9.00% |
| Indica Intermediate | 202 | 86.63% | 13.37% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0213981565 | C->A | INTERGENIC | None |