Detailed information of SNP:
|
SNP ID:
sf0214118245(Gbrowse)
Chromosome: chr02 Position: 14118245 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 93.85% | 6.15% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 493 | 85.40% | 14.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 87.72% | 12.28% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 65 | 56.92% | 43.08% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0214118245 | A->C | INTERGENIC | None |