Detailed information of SNP:
|
SNP ID:
sf0214172544(Gbrowse)
Chromosome: chr02 Position: 14172544 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 60.45% | 39.55% |
| All Indica | 779 | 37.61% | 62.39% |
| All Japonica | 494 | 98.79% | 1.21% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 367 | 38.96% | 61.04% |
| Indica II | 208 | 38.94% | 61.06% |
| Indica Intermediate | 204 | 33.82% | 66.18% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0214172544 | T->C | INTERGENIC | None |