Detailed information of SNP:
|
SNP ID:
sf0214172658(Gbrowse)
Chromosome: chr02 Position: 14172658 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 58.06% | 41.94% |
| All Indica | 789 | 32.57% | 67.43% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 371 | 32.88% | 67.12% |
| Indica II | 212 | 33.49% | 66.51% |
| Indica Intermediate | 206 | 31.07% | 68.93% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0214172658 | A->G | INTERGENIC | None |