Detailed information of SNP:
|
SNP ID:
sf0214210700(Gbrowse)
Chromosome: chr02 Position: 14210700 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 94.92% | 5.08% |
| All Indica | 781 | 91.93% | 8.07% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 373 | 91.69% | 8.31% |
| Indica II | 204 | 91.67% | 8.33% |
| Indica Intermediate | 204 | 92.65% | 7.35% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0214210700 | C->A | INTERGENIC | None |