Detailed information of SNP:
|
SNP ID:
sf0214307604(Gbrowse)
Chromosome: chr02 Position: 14307604 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1209 | 53.27% | 46.73% |
| All Indica | 618 | 14.24% | 85.76% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 46 | 71.74% | 28.26% |
| Indica I | 292 | 12.67% | 87.33% |
| Indica II | 168 | 14.88% | 85.12% |
| Indica Intermediate | 158 | 16.46% | 83.54% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 37 | 64.86% | 35.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0214307604 | G->A | LOC_Os02g24670(LOC_Os02g24670.1) | Non-Synonymous SNP |