Detailed information of SNP:
|
SNP ID:
sf0214310804(Gbrowse)
Chromosome: chr02 Position: 14310804 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1326 | 76.02% | 23.98% |
| All Indica | 714 | 56.72% | 43.28% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 325 | 65.54% | 34.46% |
| Indica II | 194 | 50.52% | 49.48% |
| Indica Intermediate | 195 | 48.21% | 51.79% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0214310804 | G->C | LOC_Os02g24680(LOC_Os02g24680.1) | Non-Synonymous SNP |