Detailed information of SNP:
SNP ID:
sf0214386452(Gbrowse)
Chromosome: chr02 Position: 14386452 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 60.39% | 39.61% |
All Indica | 799 | 94.37% | 5.63% |
All Japonica | 497 | 2.21% | 97.79% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 80.28% | 19.72% |
Indica Intermediate | 211 | 98.58% | 1.42% |
Temperate Japonica | 335 | 1.79% | 98.21% |
Tropical Japonica | 94 | 2.13% | 97.87% |
Japonica Intermediate | 68 | 4.41% | 95.59% |
Group VI/Aromatic | 14 | 14.29% | 85.71% |
Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0214386452 | T->C | LOC_Os02g24800(LOC_Os02g24800.1) | Synonymous |