Detailed information of SNP:
|
SNP ID:
sf0214433932(Gbrowse)
Chromosome: chr02 Position: 14433932 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 53.68% | 46.32% |
| All Indica | 757 | 88.38% | 11.62% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 63 | 63.49% | 36.51% |
| Indica I | 354 | 90.11% | 9.89% |
| Indica II | 197 | 82.23% | 17.77% |
| Indica Intermediate | 206 | 91.26% | 8.74% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0214433932 | T->A | LOC_Os02g24910(LOC_Os02g24910.1) | Non-Synonymous SNP |