Detailed information of SNP:
|
SNP ID:
sf0214603522(Gbrowse)
Chromosome: chr02 Position: 14603522 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1350 | 57.33% | 42.67% |
| All Indica | 736 | 94.43% | 5.57% |
| All Japonica | 496 | 1.41% | 98.59% |
| Aus | 64 | 73.44% | 26.56% |
| Indica I | 347 | 94.24% | 5.76% |
| Indica II | 198 | 93.94% | 6.06% |
| Indica Intermediate | 191 | 95.29% | 4.71% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0214603522 | C->T | INTERGENIC | None |