Detailed information of SNP:
|
SNP ID:
sf0214635898(Gbrowse)
Chromosome: chr02 Position: 14635898 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1176 | 52.13% | 47.87% |
| All Indica | 593 | 93.25% | 6.75% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 38 | 92.11% | 7.89% |
| Indica I | 268 | 92.16% | 7.84% |
| Indica II | 168 | 97.02% | 2.98% |
| Indica Intermediate | 157 | 91.08% | 8.92% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 35 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0214635898 | A->G | INTERGENIC | None |