Detailed information of SNP:
|
SNP ID:
sf0214788627(Gbrowse)
Chromosome: chr02 Position: 14788627 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1215 | 55.80% | 44.20% |
| All Indica | 619 | 19.71% | 80.29% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 52 | 53.85% | 46.15% |
| Indica I | 262 | 12.21% | 87.79% |
| Indica II | 180 | 32.22% | 67.78% |
| Indica Intermediate | 177 | 18.08% | 81.92% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 35 | 68.57% | 31.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0214788627 | A->G | LOC_Os02g25380(LOC_Os02g25380.1) | INTRON |