Detailed information of SNP:
|
SNP ID:
sf0215046166(Gbrowse)
Chromosome: chr02 Position: 15046166 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1329 | 59.97% | 40.03% |
| All Indica | 717 | 97.49% | 2.51% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 335 | 94.63% | 5.37% |
| Indica II | 187 | 100.00% | 0.00% |
| Indica Intermediate | 195 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215046166 | T->C | LOC_Os02g25710(LOC_Os02g25710.1) | Synonymous |