Detailed information of SNP:
|
SNP ID:
sf0215089213(Gbrowse)
Chromosome: chr02 Position: 15089213 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 97.71% | 2.29% |
| All Indica | 793 | 97.86% | 2.14% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 53 | 73.58% | 26.42% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 208 | 96.15% | 3.85% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215089213 | G->A | INTERGENIC | None |