Detailed information of SNP:
|
SNP ID:
sf0215092989(Gbrowse)
Chromosome: chr02 Position: 15092989 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1302 | 92.17% | 7.83% |
| All Indica | 694 | 86.17% | 13.83% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 60 | 95.00% | 5.00% |
| Indica I | 310 | 82.58% | 17.42% |
| Indica II | 192 | 85.94% | 14.06% |
| Indica Intermediate | 192 | 92.19% | 7.81% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215092989 | T->C | LOC_Os02g25770(LOC_Os02g25770.1) | Synonymous |