Detailed information of SNP:
|
SNP ID:
sf0215093859(Gbrowse)
Chromosome: chr02 Position: 15093859 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 94.81% | 5.19% |
| All Indica | 788 | 91.75% | 8.25% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 92.23% | 7.77% |
| Indica II | 208 | 90.38% | 9.62% |
| Indica Intermediate | 207 | 92.27% | 7.73% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215093859 | C->T | LOC_Os02g25770(LOC_Os02g25770.1) | Synonymous |