Detailed information of SNP:
|
SNP ID:
sf0215093878(Gbrowse)
Chromosome: chr02 Position: 15093878 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 95.29% | 4.71% |
| All Indica | 784 | 92.73% | 7.27% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 372 | 94.35% | 5.65% |
| Indica II | 207 | 90.34% | 9.66% |
| Indica Intermediate | 205 | 92.20% | 7.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215093878 | C->T | LOC_Os02g25770(LOC_Os02g25770.1) | Non-Synonymous SNP |