Detailed information of SNP:
|
SNP ID:
sf0215093910(Gbrowse)
Chromosome: chr02 Position: 15093910 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 94.90% | 5.10% |
| All Indica | 778 | 92.03% | 7.97% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 88.71% | 11.29% |
| Indica I | 360 | 87.50% | 12.50% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 207 | 92.75% | 7.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215093910 | G->A | LOC_Os02g25770(LOC_Os02g25770.1) | Synonymous |