Detailed information of SNP:
|
SNP ID:
sf0215200724(Gbrowse)
Chromosome: chr02 Position: 15200724 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 59.74% | 40.26% |
| All Indica | 764 | 94.90% | 5.10% |
| All Japonica | 495 | 1.62% | 98.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 352 | 90.06% | 9.94% |
| Indica II | 207 | 100.00% | 0.00% |
| Indica Intermediate | 205 | 98.05% | 1.95% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215200724 | T->C | LOC_Os02g25910(LOC_Os02g25910.1) | Synonymous |