Detailed information of SNP:
|
SNP ID:
sf0215246626(Gbrowse)
Chromosome: chr02 Position: 15246626 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 95.97% | 4.03% |
| All Indica | 773 | 92.88% | 7.12% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 95.05% | 4.95% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 197 | 83.76% | 16.24% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215246626 | G->A | LOC_Os02g25970(LOC_Os02g25970.1) | INTRON |