Detailed information of SNP:
|
SNP ID:
sf0215272635(Gbrowse)
Chromosome: chr02 Position: 15272635 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 60.17% | 39.83% |
| All Indica | 796 | 95.23% | 4.77% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215272635 | A->G | LOC_Os02g26014(LOC_Os02g26014.1) | INTRON |