Detailed information of SNP:
|
SNP ID:
sf0215420670(Gbrowse)
Chromosome: chr02 Position: 15420670 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 94.03% | 5.97% |
| All Indica | 757 | 89.56% | 10.44% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 361 | 79.78% | 20.22% |
| Indica II | 195 | 100.00% | 0.00% |
| Indica Intermediate | 201 | 97.01% | 2.99% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215420670 | G->A | LOC_Os02g26270(LOC_Os02g26270.1) | INTRON |