Detailed information of SNP:
|
SNP ID:
sf0215509941(Gbrowse)
Chromosome: chr02 Position: 15509941 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 94.24% | 5.76% |
| All Indica | 771 | 90.01% | 9.99% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 88.40% | 11.60% |
| Indica II | 207 | 94.69% | 5.31% |
| Indica Intermediate | 202 | 88.12% | 11.88% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215509941 | G->A | INTERGENIC | None |