Detailed information of SNP:
|
SNP ID:
sf0215545109(Gbrowse)
Chromosome: chr02 Position: 15545109 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1258 | 97.22% | 2.78% |
| All Indica | 650 | 94.62% | 5.38% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 307 | 88.93% | 11.07% |
| Indica II | 164 | 100.00% | 0.00% |
| Indica Intermediate | 179 | 99.44% | 0.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215545109 | T->A | LOC_Os02g26480(LOC_Os02g26480.2) | INTRON |
| sf0215545109 | T->A | LOC_Os02g26480(LOC_Os02g26480.1) | INTRON |