Detailed information of SNP:
|
SNP ID:
sf0215665066(Gbrowse)
Chromosome: chr02 Position: 15665066 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 60.49% | 39.51% |
| All Indica | 787 | 95.68% | 4.32% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 369 | 96.48% | 3.52% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215665066 | T->C | LOC_Os02g26690(LOC_Os02g26690.1) | INTRON |