Detailed information of SNP:
|
SNP ID:
sf0215729647(Gbrowse)
Chromosome: chr02 Position: 15729647 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 54.45% | 45.55% |
| All Indica | 776 | 85.44% | 14.56% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 362 | 86.74% | 13.26% |
| Indica II | 206 | 83.50% | 16.50% |
| Indica Intermediate | 208 | 85.10% | 14.90% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215729647 | A->G | LOC_Os02g26810(LOC_Os02g26810.1) | Non-Synonymous SNP |