Detailed information of SNP:
|
SNP ID:
sf0215795951(Gbrowse)
Chromosome: chr02 Position: 15795951 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 60.59% | 39.41% |
| All Indica | 798 | 95.11% | 4.89% |
| All Japonica | 496 | 1.41% | 98.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215795951 | C->T | INTERGENIC | None |