Detailed information of SNP:
|
SNP ID:
sf0215850531(Gbrowse)
Chromosome: chr02 Position: 15850531 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1230 | 61.22% | 38.78% |
| All Indica | 641 | 29.02% | 70.98% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 43 | 90.70% | 9.30% |
| Indica I | 303 | 27.72% | 72.28% |
| Indica II | 168 | 25.60% | 74.40% |
| Indica Intermediate | 170 | 34.71% | 65.29% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 63.89% | 36.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215850531 | T->A | INTERGENIC | None |