Detailed information of SNP:
|
SNP ID:
sf0215884579(Gbrowse)
Chromosome: chr02 Position: 15884579 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1302 | 98.69% | 1.31% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 385 | 95.58% | 4.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 263 | 98.86% | 1.14% |
| Tropical Japonica | 71 | 92.96% | 7.04% |
| Japonica Intermediate | 51 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215884579 | C->T | INTERGENIC | None |