Detailed information of SNP:
|
SNP ID:
sf0215892480(Gbrowse)
Chromosome: chr02 Position: 15892480 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 58.59% | 41.41% |
| All Indica | 796 | 94.35% | 5.65% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215892480 | A->G | INTERGENIC | None |