Detailed information of SNP:
|
SNP ID:
sf0215945425(Gbrowse)
Chromosome: chr02 Position: 15945425 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1312 | 93.60% | 6.40% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 393 | 81.17% | 18.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 269 | 88.85% | 11.15% |
| Tropical Japonica | 69 | 86.96% | 13.04% |
| Japonica Intermediate | 55 | 36.36% | 63.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215945425 | C->T | LOC_Os02g27120(LOC_Os02g27120.1) | Non-Synonymous SNP |