Detailed information of SNP:
|
SNP ID:
sf0215981227(Gbrowse)
Chromosome: chr02 Position: 15981227 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 57.22% | 42.78% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215981227 | T->A | LOC_Os02g27160(LOC_Os02g27160.1) | Non-Synonymous SNP |